Stem-loop sequence dvi-mir-306

Accession

MI0009481 (change log)

Description

Drosophila virilis miR-306 stem-loop

Gene family

MIPF0000313; mir-306

Stem-loop

   cc  u  u       uu            ucaucuau     
5'   gc gc cagguac  agugacucucaa        ugcu 
     || || |||||||  ||||||||||||        ||| u
3'   cg cg guccgug  ucgcugggaguu        acgu 
   uc  c  u       uc            ----ccau     

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (DroVir3): scaffold_12963: 12863214-12863292 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dvi-mir-306

• dvi-mir-9c: scaffold_12963: 12863849-12863937 [-]
• dvi-mir-306: scaffold_12963: 12863214-12863292 [-]
• dvi-mir-79: scaffold_12963: 12863042-12863133 [-]
• dvi-mir-9b: scaffold_12963: 12862861-12862949 [-]

Database links

• miRBase Tracker:MI0009481

Mature sequence dvi-miR-306-5p

• Accession: MIMAT0008913
• Previous IDs: dvi-miR-306
• Sequence: 8 - ucagguacuuagugacucuca - 28
• Evidence: experimental; Illumina [2]

Mature sequence dvi-miR-306-3p

• Accession: MIMAT0008914
• Previous IDs: dvi-miR-306*
• Sequence: 53 - gagggucgcucugugccugugc - 74
• Evidence: experimental; Illumina [2]

References

1. PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2. PMID:24448446 "Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis" Ninova M, Ronshaugen M, Griffiths-Jones S RNA. 20:360-372(2014).