Stem-loop sequence dvi-mir-2a-1

AccessionMI0009477 (change log)
DescriptionDrosophila virilis miR-2a-1 stem-loop
Gene family MIPF0000049; mir-2
Literature search

1 open access papers mention dvi-mir-2a-1
(1 sentences)

Stem-loop 
       c    -      -         a    auuugaaa  u 
5' gcug gcuc ucaaag ugguuguga augc        gc u
   |||| |||| |||||| ||||||||| ||||        || u
3' cgau cgag aguuuc accgacacu uacg        cg g
       u    u      g         a    --------  c
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (DroVir3) Overlapping transcripts
scaffold_12723: 2960783-2960859 [-]
intergenic
Clustered miRNAs
< 10kb from dvi-mir-2a-1
dvi-mir-2bscaffold_12723: 2961099-2961181 [-]
dvi-mir-2a-1scaffold_12723: 2960783-2960859 [-]
dvi-mir-2a-2scaffold_12723: 2960516-2960587 [-]
Database links

Mature sequence dvi-miR-2a-5p

Accession MIMAT0032043
Sequence

7 -  

cucucaaagugguugugaaaug

 - 28

Get sequence
Evidence experimental; Illumina [2]

Mature sequence dvi-miR-2a-3p

Accession MIMAT0008909
Previous IDsdvi-miR-2a
Sequence

50 -  

uaucacagccagcuuugaugagc

 - 72

Get sequence
Evidence experimental; Illumina [2]

References

1
PMID:17994087 "Evolution of genes and genomes on the Drosophila phylogeny" Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie Nature. 450:203-218(2007).
2
PMID:24448446 "Fast-evolving microRNAs are highly expressed in the early embryo of Drosophila virilis" Ninova M, Ronshaugen M, Griffiths-Jones S RNA. 20:360-372(2014).