miRBase entry: dsi-mir-288

Stem-loop dsi-mir-288


Accession
MI0009464
Description
Drosophila simulans dsi-mir-288 precursor miRNA
Gene family
MIPF0000223; mir-288


Sequence

cggucaugucguaauuagcggagcacggcauugccggcgauaauuaaugacgguggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
(((((.((((((....((.((((..((((((.(((((((........((((....)))))))))))...)))))).)))).))..)))))).)))))

Structure
     a      aauu  c    ca      --u       auaauuaa    g 
cgguc ugucgu    ag ggag  cggcau   gccggcg        ugac g
||||| ||||||    || ||||  ||||||   |||||||        ||||  
gccgg acaGUA    UU CUUU  GCUGUA   Ugguugc        acug u
     c      --CU  A    -A      CUU       --------    g 


Annotation confidence Not enough data
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Genome context
chr2L: 20181636-20181732 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dsi-mir-288
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-288

Accession MIMAT0008897
Description Drosophila simulans dsi-miR-288 mature miRNA
Sequence 66 - UUUCAUGUCGAUUUCAUUUCAUG - 88
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218