miRBase entry: dsi-mir-13a

Stem-loop dsi-mir-13a


Accession
MI0009447
Description
Drosophila simulans dsi-mir-13a precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

uacguaacuccucaaaggguugugaaaugucgacuauuaucuacucaUAUCACAGCCAUUUUGAUGAGUuucgug
((((.(((((.((((((((((((((.(((................))).)))))))).)))))).))))).))))

Structure
    u     c      -        a   ucgacua 
uacg aacuc ucaaag gguuguga aug       u
|||| ||||| |||||| |||||||| |||        
gugc uUGAG AGUUUU CCGACACU Uac       u
    u     U      A        A   ucaucua 


Annotation confidence Not enough data
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Genome context
chr3R: 10237837-10237911 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dsi-mir-13a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-13a

Accession MIMAT0008881
Description Drosophila simulans dsi-miR-13a mature miRNA
Sequence 48 - UAUCACAGCCAUUUUGAUGAGU - 69
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218