miRBase entry: dsi-mir-311

Stem-loop dsi-mir-311

Accession

MI0009422

Description

Drosophila simulans dsi-mir-311 precursor miRNA

Gene family

MIPF0000566; mir-310

Sequence

ucuagaucauuuuuCGGACGGUAUAUGAGUCAAUAUUuuuuuuuuuucgaauaUAUUGCACAUUCACCGGCCUGAaaauaucaaga
(((.(((.((((((.((.((((..(((.(.((((((.(((........))).))))))).)))..)))).)).))))))))).)))

Structure

   a   c      C  A    AU   A U      U   uuu 
ucu gau auuuuu GG CGGU  AUG G CAAUAU uuu   u
||| ||| |||||| || ||||  ||| | |||||| |||    
aga cua uaaaAG CC GCCA  UAC C GUUAUa aag   u
   a   -      U  G    CU   A -      u   cuu

Annotation confidence Not enough data

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Genome context

chr2R: 15132682-15132767 [-]

Clustered miRNAs

8 other miRNAs are < 10 kb from dsi-mir-311

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dsi-miR-311-3p

Accession	MIMAT0008857
Description	Drosophila simulans dsi-miR-311-3p mature miRNA
Sequence	54 - UAUUGCACAUUCACCGGCCUGA - 75
Evidence	experimental Illumina [2]

Mature dsi-miR-311-5p

Accession	MIMAT0037347
Description	Drosophila simulans dsi-miR-311-5p mature miRNA
Sequence	15 - CGGACGGUAUAUGAGUCAAUAUU - 37
Evidence	experimental Illumina [2]

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218

PubMed ID: 24985917
Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
"Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
"Genome Res (2014) 24:1236-1250