miRBase entry: dsi-mir-310

Stem-loop dsi-mir-310


Accession
MI0009406
Description
Drosophila simulans dsi-mir-310 precursor miRNA
Gene family
MIPF0000566; mir-310


Sequence

aacauaaacauuugcAGGACGGGUCGUGUGUCAGUauauuuacuucuuagcuaUAUUGCACACUUCCCGGCCUUUaaauguccaauguu
(((((..(((((((.(((.((((..(((((.(((((((.(((.....))).))))))))))))..)))).))).)))))))...)))))

Structure
     -aa       c   A    UC     U       u   c 
aacau   acauuug AGG CGGG  GUGUG CAGUaua uua u
|||||   ||||||| ||| ||||  ||||| ||||||| ||| u
uugua   uguaaaU UCC GCCC  CACAC GUUAUau gau c
     acc       U   G    UU     -       c   u 


Annotation confidence Not enough data
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Genome context
chr2R: 15132557-15132645 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from dsi-mir-310
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dsi-miR-310-3p

Accession MIMAT0008841
Description Drosophila simulans dsi-miR-310-3p mature miRNA
Sequence 54 - UAUUGCACACUUCCCGGCCUUU - 75
Evidence experimental
Illumina [2]

Mature dsi-miR-310-5p

Accession MIMAT0037346
Description Drosophila simulans dsi-miR-310-5p mature miRNA
Sequence 16 - AGGACGGGUCGUGUGUCAGU - 35
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250