miRBase entry: dse-mir-2a-1

Stem-loop dse-mir-2a-1


Accession
MI0009397
Description
Drosophila sechellia dse-mir-2a-1 precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

gcugggcucucaaagugguugugaaaugcauuuccgcuuugcgcggcaUAUCACAGCCAGCUUUGAUGAGCuuagc
((((((((((((((((((((((((.((((.....(((.....))))))).))))))))).)))))).)))))))))

Structure
         -      -         a    auuuc   u 
gcugggcuc ucaaag ugguuguga augc     cgc u
||||||||| |||||| ||||||||| ||||     ||| u
cgauuCGAG AGUUUC ACCGACACU Uacg     gcg g
         U      G         A    -----   c 


Annotation confidence Not enough data
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Genome context
scaffold_7: 3184259-3184334 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dse-mir-2a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dse-miR-2a

Accession MIMAT0008819
Description Drosophila sechellia dse-miR-2a mature miRNA
Sequence 49 - UAUCACAGCCAGCUUUGAUGAGC - 71
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218