miRBase entry: dse-mir-281-1

Stem-loop dse-mir-281-1


Accession
MI0009365
Description
Drosophila sechellia dse-mir-281-1 precursor miRNA
Gene family
MIPF0000087; mir-46


Sequence

cgaauaagugaauaAAGAGAGCUGUCCGUCGACAGUccagaaaccauuuaauaucacUGUCAUGGAAUUGCUCUCUUUGUauaauauucg
((((((.....(((((((((((..(((((.((((((...................)))))))))))...)))))))))))....))))))

Structure
      aguga           -UG     C      ccagaaac 
cgaaua     auaAAGAGAGC   UCCGU GACAGU        c
||||||     |||||||||||   ||||| ||||||        a
gcuuau     UGUUUCUCUCG   AGGUA CUGUca        u
      -aaua           UUA     -      cuauaauu 


Annotation confidence Not enough data
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Genome context
scaffold_1: 5602980-5603069 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dse-mir-281-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dse-miR-281-3p

Accession MIMAT0008783
Description Drosophila sechellia dse-miR-281-3p mature miRNA
Sequence 58 - UGUCAUGGAAUUGCUCUCUUUGU - 80
Evidence not_experimental

Mature dse-miR-281-1-5p

Accession MIMAT0008782
Description Drosophila sechellia dse-miR-281-1-5p mature miRNA
Sequence 15 - AAGAGAGCUGUCCGUCGACAGU - 36
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218