miRBase entry: dse-mir-286

Stem-loop dse-mir-286

Accession

MI0009359

Description

Drosophila sechellia dse-mir-286 precursor miRNA

Gene family

MIPF0000225; mir-286

Sequence

uuaaaauugaauggcgaaugucgguauggucucuuuuuccaauaaagguuucgaucaagcgaagUGACUAGACCGAACACUCGUGCUauaauuuuaaaa
(((((((((....((((.(((((((.(((((.((((..((......))............)))).))))).)))).))).))))....)))))))))..

Structure

--         aaug    a   -    a     u    ----------uu  aa 
  uuaaaauug    gcga ugu cggu ugguc cuuu            cc  u
  |||||||||    |||| ||| |||| ||||| ||||            ||   
  aauuuuaau    UGCU ACA GCCA AUCAG gaag            gg  a
aa         aUCG    C   A    G     U    cgaacuagcuuu  aa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_1: 13063657-13063755 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dse-mir-286

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-286

Accession	MIMAT0008797
Description	Drosophila sechellia dse-miR-286 mature miRNA
Sequence	65 - UGACUAGACCGAACACUCGUGCU - 87
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218