miRBase entry: dse-mir-13a

Stem-loop dse-mir-13a

Accession

MI0009348

Description

Drosophila sechellia dse-mir-13a precursor miRNA

Gene family

MIPF0000049; mir-2

Sequence

uacguaacuccucaaaggguugugaaaugucgacuauuaucuacucaUAUCACAGCCAUUUUGAUGAGUuucgug
((((.(((((.((((((((((((((.(((................))).)))))))).)))))).))))).))))

Structure

    u     c      -        a   ucgacua 
uacg aacuc ucaaag gguuguga aug       u
|||| ||||| |||||| |||||||| |||        
gugc uUGAG AGUUUU CCGACACU Uac       u
    u     U      A        A   ucaucua

Annotation confidence Not enough data

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Genome context

scaffold_0: 10705068-10705142 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dse-mir-13a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-13a

Accession	MIMAT0008786
Description	Drosophila sechellia dse-miR-13a mature miRNA
Sequence	48 - UAUCACAGCCAUUUUGAUGAGU - 69
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218