miRBase entry: dse-mir-281-2

Stem-loop dse-mir-281-2

Accession

MI0009344

Description

Drosophila sechellia dse-mir-281-2 precursor miRNA

Gene family

MIPF0000087; mir-46

Sequence

cgaauugugaaaugAAGAGAGCUAUCCGUCGACAGUcaaguuaagaccgauuguaauacUGUCAUGGAAUUGCUCUCUUUGUauaacauucg
(((((.((...(((((((((((..(((((.((((((..((((......)))).....)))))))))))...)))))))))))...)))))))

Structure

     u  gaa           -UA     C      ---ca    aa 
cgaau gu   augAAGAGAGC   UCCGU GACAGU     aguu  g
||||| ||   |||||||||||   ||||| ||||||     ||||   
gcuua ca   UGUUUCUCUCG   AGGUA CUGUca     uuag  a
     -  aua           UUA     -      uaaug    cc

Annotation confidence Not enough data

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Genome context

scaffold_1: 5602761-5602852 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dse-mir-281-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-281-2-5p

Accession	MIMAT0009187
Description	Drosophila sechellia dse-miR-281-2-5p mature miRNA
Sequence	15 - AAGAGAGCUAUCCGUCGACAGU - 36
Evidence	not_experimental

Mature dse-miR-281-3p

Accession	MIMAT0008783
Description	Drosophila sechellia dse-miR-281-3p mature miRNA
Sequence	60 - UGUCAUGGAAUUGCUCUCUUUGU - 82
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218