miRBase entry: dpe-mir-287

Stem-loop dpe-mir-287

Accession

MI0009315

Description

Drosophila persimilis dpe-mir-287 precursor miRNA

Gene family

MIPF0000224; mir-287

Sequence

augugugaguguggggccugaaauuuugcacacauuuacaauaauuguaaaUGUGUUGAAAAUCGUUUGCACaac
.((((((((((...........(((((..((((((((((((...))))))))))))..)))))))))))))))..

Structure

-a          uggggccugaa     gc            u 
  ugugugagug           auuuu  acacauuuacaa  
  ||||||||||           |||||  |||||||||||| a
  aCACGUUUGC           UAAAA  UGUGUaaauguu  
ca          -----------     GU            a

Annotation confidence Not enough data

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Genome context

scaffold_8: 2069966-2070040 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dpe-mir-287

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-287

Accession	MIMAT0008757
Description	Drosophila persimilis dpe-miR-287 mature miRNA
Sequence	52 - UGUGUUGAAAAUCGUUUGCAC - 72
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218