miRBase entry: dpe-mir-79

Stem-loop dpe-mir-79

Accession

MI0009304

Description

Drosophila persimilis dpe-mir-79 precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

cugcuucugcuuuggcgcuuuagcuguaugauagauuuaaaauacuucaUAAAGCUAGAUUACCAAAGCAUuggcuc
..(((..((((((((...(((((((.(((((...............))))).)))))))...))))))))..)))..

Structure

cu   uc        cgc       g     uagauu 
  gcu  ugcuuugg   uuuagcu uauga      u
  |||  ||||||||   ||||||| |||||      a
  cgg  ACGAAACC   AGAUCGA AUacu      a
cu   uU        AUU       A     ucauaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_1: 9895123-9895199 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dpe-mir-79

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-79

Accession	MIMAT0008747
Description	Drosophila persimilis dpe-miR-79 mature miRNA
Sequence	50 - UAAAGCUAGAUUACCAAAGCAU - 71
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218