miRBase entry: dpe-mir-275

Stem-loop dpe-mir-275

Accession

MI0009300

Description

Drosophila persimilis dpe-mir-275 precursor miRNA

Gene family

MIPF0000187; mir-275

Sequence

aagucuccuaccaugcgcgcuaaucagagaccggggcugguuuuuucacugcagUCAGGUACCUGAAGUAGCGCGCGuggugcuagaca
..((((..((((((((((((((.((((..(((..(((((............))))).)))..))))..))))))))))))))..)))).

Structure

aa    cc              -a    ag   gg     guuuu 
  gucu  uaccaugcgcgcua  ucag  acc  ggcug     u
  ||||  ||||||||||||||  ||||  |||  |||||      
  caga  gugguGCGCGCGAU  AGUC  UGG  CUgac     u
-a    uc              GA    CA   -A     gucac

Annotation confidence Not enough data

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Genome context

scaffold_5: 1086462-1086550 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dpe-mir-275

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-275

Accession	MIMAT0008744
Description	Drosophila persimilis dpe-miR-275 mature miRNA
Sequence	55 - UCAGGUACCUGAAGUAGCGCGCG - 77
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218