miRBase entry: dpe-let-7-1

Stem-loop dpe-let-7-1


Accession
MI0009254
Description
Drosophila persimilis dpe-let-7-1 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

ucuggcaaauUGAGGUAGUAGGUUGUAUAGUaguacuucagaucguacuauacaaugugcuagcuuucuuugcuuga
((.((((((..(((.(((((.(((((((((((.............))))))))))).))))).)))..)))))).))

Structure
  u      uU   G     G           guacu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa     u
|| ||||||  ||| ||||| |||||||||||     c
ag ucguuu  uuc aucgu uaacauaucau     a
  u      cu   g     g           gcuag 


Annotation confidence Not enough data
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Genome context
scaffold_1: 5116234-5116310 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dpe-let-7-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dpe-let-7

Accession MIMAT0008699
Description Drosophila persimilis dpe-let-7 mature miRNA
Sequence 11 - UGAGGUAGUAGGUUGUAUAGU - 31
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218