miRBase entry: dmo-mir-13b-1

Stem-loop dmo-mir-13b-1


Accession
MI0009251
Description
Drosophila mojavensis dmo-mir-13b-1 precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

ccaugucguuaaaaugucugugaccguauguauucacuaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((.((((((...((((..........)))))))))).)))))))))))...)))

Structure
   -ug           u      ccg    uauu 
cca   ucguuaaaaug cuguga   uaug    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    a
   uUG           C      ---    uauc 


Annotation confidence Not enough data
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Genome context
scaffold_6540: 10568524-10568591 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dmo-mir-13b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dmo-miR-13b

Accession MIMAT0008636
Description Drosophila mojavensis dmo-miR-13b mature miRNA
Sequence 43 - UAUCACAGCCAUUUUGACGAGU - 64
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218