miRBase entry: dmo-mir-13a

Stem-loop dmo-mir-13a


Accession
MI0009214
Description
Drosophila mojavensis dmo-mir-13a precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

ugcguaacucuucaagggguugugaaauguagccauuaucaagucaUAUCACAGCCAUUUUGAUGAGUuucgug
.(((.(((((.((((((((((((((.(((...............))).)))))))).)))))).))))).))).

Structure
u   u     u      -        a   uagcca 
 gcg aacuc ucaagg gguuguga aug      u
 ||| ||||| |||||| |||||||| |||      u
 ugc uUGAG AGUUUU CCGACACU Uac      a
g   u     U      A        A   ugaacu 


Annotation confidence Not enough data
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Genome context
scaffold_6540: 10568354-10568427 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dmo-mir-13a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dmo-miR-13a

Accession MIMAT0008661
Description Drosophila mojavensis dmo-miR-13a mature miRNA
Sequence 47 - UAUCACAGCCAUUUUGAUGAGU - 68
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218