miRBase entry: dmo-mir-281-1

Stem-loop dmo-mir-281-1


Accession
MI0009195
Description
Drosophila mojavensis dmo-mir-281-1 precursor miRNA
Gene family
MIPF0000087; mir-46


Sequence

cgaauaagugaauaAAGAGAGCUGUCCGUCGACAGUccaguaaagauuguaaaacUGUCAUGGAAUUGCUCUCUUUGUaugauauucg
((((((.....(((((((((((..(((((.((((((.((((....))))....)))))))))))...)))))))))))....))))))

Structure
      aguga           -UG     C      ---c    a 
cgaaua     auaAAGAGAGC   UCCGU GACAGU    cagu a
||||||     |||||||||||   ||||| ||||||    ||||  
gcuuau     UGUUUCUCUCG   AGGUA CUGUca    guua a
      -agua           UUA     -      aaau    g 


Annotation confidence Not enough data
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Genome context
scaffold_6496: 6376234-6376321 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dmo-mir-281-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dmo-miR-281-1-5p

Accession MIMAT0008641
Description Drosophila mojavensis dmo-miR-281-1-5p mature miRNA
Sequence 15 - AAGAGAGCUGUCCGUCGACAGU - 36
Evidence not_experimental

Mature dmo-miR-281-3p

Accession MIMAT0008642
Description Drosophila mojavensis dmo-miR-281-3p mature miRNA
Sequence 56 - UGUCAUGGAAUUGCUCUCUUUGU - 78
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218