miRBase entry: dgr-mir-5-2

Stem-loop dgr-mir-5-2


Accession
MI0009175
Description
Drosophila grimshawi dgr-mir-5-2 precursor miRNA
Gene family
MIPF0000309; mir-5


Sequence

gcuaAAAGGAACGAUCGUUGUGAUAUGcguucauuaaaucguuacauaucacagugauuuuccuuuauagcgc
(((((((((((.(((((((((((((((((..........))...)))))))))))))))))))))).))))..

Structure
--    -       C               ---  uuca 
  gcua AAAGGAA GAUCGUUGUGAUAUG   cg    u
  |||| ||||||| |||||||||||||||   ||     
  cgau uuuccuu uuagugacacuauac   gc    u
cg    a       -               auu  uaaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_5621: 3132-3204 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dgr-mir-5-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-5

Accession MIMAT0008570
Description Drosophila grimshawi dgr-miR-5 mature miRNA
Sequence 5 - AAAGGAACGAUCGUUGUGAUAUG - 27
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218