miRBase entry: dgr-mir-125-1

Stem-loop dgr-mir-125-1


Accession
MI0009156
Description
Drosophila grimshawi dgr-mir-125-1 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

gacaugugcaaauguuuguauggcugauUCCCUGAGACCCUAACUUGUGAcuuuuaauaccaguuucacaaguuuugaucuccgguauuggacgcaaacuugcugauguu
(((((..((((..((((((....(((((..((.((((.(..(((((((((...............)))))))))..).)))).)).)))))..))))))))))..)))))

Structure
     gu    au      augg     UC  U    C CU         cuuuua 
gacau  gcaa  guuugu    cugau  CC GAGA C  AACUUGUGA      a
|||||  ||||  ||||||    |||||  || |||| |  |||||||||      u
uugua  cguu  caaacg    gguua  gg cucu g  uugaacacu      a
     gu    --      --ca     -u  c    a uu         uugacc 


Annotation confidence Not enough data
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Genome context
scaffold_15252: 6428923-6429032 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dgr-mir-125-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-125

Accession MIMAT0008610
Description Drosophila grimshawi dgr-miR-125 mature miRNA
Sequence 29 - UCCCUGAGACCCUAACUUGUGA - 50
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218