miRBase entry: dgr-mir-13b-1

Stem-loop dgr-mir-13b-1

Accession

MI0009151

Description

Drosophila grimshawi dgr-mir-13b-1 precursor miRNA

Gene family

MIPF0000049; mir-2

Sequence

ccaugucguuaaaaugcuugugaccuuauguauuuuauaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((.((((((...((((..........)))))))))).)))))))))))...)))

Structure

   -ug           c      ccu    uauu 
cca   ucguuaaaaug uuguga   uaug    u
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    u
   uUG           C      ---    uaua

Annotation confidence Not enough data

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Genome context

scaffold_14906: 4357504-4357571 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dgr-mir-13b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dgr-miR-13b

Accession	MIMAT0008605
Description	Drosophila grimshawi dgr-miR-13b mature miRNA
Sequence	43 - UAUCACAGCCAUUUUGACGAGU - 64
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218