miRBase entry: dgr-mir-6-1

Stem-loop dgr-mir-6-1


Accession
MI0009139
Description
Drosophila grimshawi dgr-mir-6-1 precursor miRNA
Gene family
MIPF0000119; mir-6


Sequence

uguaaagagaauagaugcugugcuguauguugaacguauugucuaUAUCACAGUGGCUGUUCUUUUUgua
..((((((((((((..(((((((.((((((...)))))).).......))))))..))))))))))))..

Structure
ug            au      ------- u      u 
  uaaagagaauag  gcugug       c guaugu  
  ||||||||||||  ||||||       | |||||| g
  gUUUUUCUUGUC  UGACAC       g uaugca  
au            GG      UAUaucu u      a 


Annotation confidence Not enough data
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Genome context
scaffold_15112: 2108232-2108301 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from dgr-mir-6-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-6

Accession MIMAT0008569
Description Drosophila grimshawi dgr-miR-6 mature miRNA
Sequence 46 - UAUCACAGUGGCUGUUCUUUUU - 67
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218