miRBase entry: dgr-let-7-1

Stem-loop dgr-let-7-1


Accession
MI0009138
Description
Drosophila grimshawi dgr-let-7-1 precursor miRNA
Gene family
MIPF0000002; let-7


Sequence

ucuggcaaauUGAGGUAGUAGGUUGUAUAGUaguaucuaucuagcauacuauacagcuugcuagcuuucuuugcuuga
((.((((((..(((.(((((((((((((((((((.........)).))))))))))))))))).)))..)))))).))

Structure
  u      uU   G                 -  auc 
uc ggcaaa  GAG UAGUAGGUUGUAUAGUa gu   u
|| ||||||  ||| ||||||||||||||||| ||   a
ag ucguuu  uuc aucguucgacauaucau cg   u
  u      cu   g                 a  auc 


Annotation confidence Not enough data
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Genome context
scaffold_3792: 147-224 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dgr-let-7-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-let-7

Accession MIMAT0008596
Description Drosophila grimshawi dgr-let-7 mature miRNA
Sequence 11 - UGAGGUAGUAGGUUGUAUAGU - 31
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218