miRBase entry: dgr-mir-79

Stem-loop dgr-mir-79


Accession
MI0009123
Description
Drosophila grimshawi dgr-mir-79 precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

uugccgucgcuuuggcgcuuuagcuguaugauagauuugaauacuucaUAAAGCUAGAUUACCAAAGCAUcggcgc
.(((((..(((((((...(((((((.(((((..............))))).)))))))...)))))))..))))).

Structure
u     uc       cgc       g     uagauu 
 ugccg  gcuuugg   uuuagcu uauga      u
 |||||  |||||||   ||||||| |||||       
 gcggc  CGAAACC   AGAUCGA AUacu      g
c     UA       AUU       A     ucauaa 


Annotation confidence Not enough data
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Genome context
scaffold_14978: 831100-831175 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dgr-mir-79
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dgr-miR-79

Accession MIMAT0008583
Description Drosophila grimshawi dgr-miR-79 mature miRNA
Sequence 49 - UAAAGCUAGAUUACCAAAGCAU - 70
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218