miRBase entry: der-mir-317

Stem-loop der-mir-317

Accession

MI0009082

Description

Drosophila erecta der-mir-317 precursor miRNA

Gene family

MIPF0000144; mir-317

Sequence

augcaacugccauugggauacacccugugcucgcuuugaaugaaaugcaagcaagUGAACACAGCUGGUGGUAUCCAGUggccguuuggcgu
(((((((.(((((((((...(((((((((.((((((.(..((.....))..))))))).)))))..))))...))))))))).)))..))))

Structure

    --   u         aua    --     c      u aa  a 
augc  aac gccauuggg   cacc  cugug ucgcuu g  ug a
||||  ||| |||||||||   ||||  ||||| |||||| |  || a
ugcg  uug cggUGACCU   GUGG  GACAC AGUgaa c  ac u
    gu   c         AUG    UC     A      - ga  g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_4770: 15683471-15683562 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from der-mir-317

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-317

Accession	MIMAT0008541
Description	Drosophila erecta der-miR-317 mature miRNA
Sequence	56 - UGAACACAGCUGGUGGUAUCCAGU - 79
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218