miRBase entry: der-mir-34

Stem-loop der-mir-34

Accession

MI0009046

Description

Drosophila erecta der-mir-34 precursor miRNA

Gene family

MIPF0000039; mir-34

Sequence

uggcuaugcgcuuUGGCAGUGUGGUUAGCUGGUUGuguagccaaucauugcuugugacaacucacagccacuaucuucacugccgccgcgacaagc
..(((.(((((..((((((((.((.(((.((((((((.((....((((.....))))...))))))))))))).)).))))))))..))).)))))

Structure

ug   a  -   uu        U  U   C        u  ccaa    u 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug ag    ucau g
  ||| || |||  |||||||| || ||| |||||||| ||    |||| c
  cga ac gcg  gccgucac uc auc accgacac uc    agug u
--   -  a   cc        u  u   -        -  -aac    u

Annotation confidence Not enough data

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Genome context

scaffold_4770: 15673314-15673409 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from der-mir-34

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-34

Accession	MIMAT0008508
Description	Drosophila erecta der-miR-34 mature miRNA
Sequence	14 - UGGCAGUGUGGUUAGCUGGUUG - 35
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218