miRBase entry: der-mir-13b-1

Stem-loop der-mir-13b-1

Accession

MI0009039

Description

Drosophila erecta der-mir-13b-1 precursor miRNA

Gene family

MIPF0000049; mir-2

Sequence

ccaugucguuaaaauguuugugaacuuauguauucgcaaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((.((((((...((((..........)))))))))).)))))))))))...)))

Structure

   -ug           u      acu    uauu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    g
   uUG           C      ---    uaac

Annotation confidence Not enough data

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Genome context

scaffold_4770: 10769273-10769340 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from der-mir-13b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-13b

Accession	MIMAT0008484
Description	Drosophila erecta der-miR-13b mature miRNA
Sequence	43 - UAUCACAGCCAUUUUGACGAGU - 64
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218