miRBase entry: der-mir-310b

Stem-loop der-mir-310b


Accession
MI0009024
Description
Drosophila erecta der-mir-310b precursor miRNA
Gene family
MIPF0000566; mir-310


Sequence

acacaaauauuugcAGGACGGGUCGUGUGUUAAUGuauaaaucuauuagcuaUAUUGCACACUUCCCGCUCUUUaaauguccaguguu
((((..(((((((.((((((((..((((((.((((((.............))))))))))))..)))).)))))))))))...)))).

Structure
-    -aa       c    -    UC      U      uaaau 
 acac   auauuug AGGA CGGG  GUGUGU AAUGua     c
 ||||   ||||||| |||| ||||  |||||| ||||||     u
 ugug   uguaaaU UUCU GCCC  CACACG UUAUau     a
u    acc       -    C    UU      -      cgauu 


Annotation confidence Not enough data
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Genome context
scaffold_4845: 10617892-10617979 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from der-mir-310b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature der-miR-310b-3p

Accession MIMAT0008485
Description Drosophila erecta der-miR-310b-3p mature miRNA
Sequence 53 - UAUUGCACACUUCCCGCUCUUU - 74
Evidence experimental
Illumina [2]

Mature der-miR-310b-5p

Accession MIMAT0037336
Description Drosophila erecta der-miR-310b-5p mature miRNA
Sequence 15 - AGGACGGGUCGUGUGUUAAUG - 35
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218

  2. PubMed ID: 24985917
    Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
    "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
    "Genome Res (2014) 24:1236-1250