miRBase entry: dan-mir-100

Stem-loop dan-mir-100


Accession
MI0009017
Description
Drosophila ananassae dan-mir-100 precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

ccauuaacagaAACCCGUAAAUCCGAACUUGUGcuguuuuuuaucuguuacaagaccggcauuaugggagucugucaaugca
.((((.(((((..(((((((..(((..(((((((.(........).).))))))..)))..)))))))..))))).))))..

Structure
-c    a     AA       AU   AA      - u uuu 
  cauu acaga  CCCGUAA  CCG  CUUGUG c g   u
  |||| |||||  |||||||  |||  |||||| | |    
  guaa ugucu  ggguauu  ggc  gaacau g c   u
ac    c     ga       ac   ca      u u uau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_12916: 2378771-2378852 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dan-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-100

Accession MIMAT0008478
Description Drosophila ananassae dan-miR-100 mature miRNA
Sequence 12 - AACCCGUAAAUCCGAACUUGUG - 33
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218