miRBase entry: dan-mir-311a

Stem-loop dan-mir-311a


Accession
MI0009008
Description
Drosophila ananassae dan-mir-311a precursor miRNA
Gene family
MIPF0000013; mir-25


Sequence

ccagauuaucuucaggacgguauuugugucaauauggauauuucaaacaUAUUGCACUUAUACCGGCCUGAugaucuc
..((((((...(((((.((((((..(((.(((((((...........))))))))))..)))))).))))))))))).

Structure
cc      ucu     a      uu   u       gaua 
  agauua   ucagg cgguau  gug caauaug    u
  ||||||   ||||| ||||||  ||| |||||||    u
  ucuagu   AGUCC GCCAUA  CAC GUUAUac    u
-c      ---     G      UU   -       aaac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_13266: 4132931-4133008 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dan-mir-311a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-311a

Accession MIMAT0008471
Description Drosophila ananassae dan-miR-311a mature miRNA
Sequence 50 - UAUUGCACUUAUACCGGCCUGA - 71
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218