miRBase entry: dan-mir-5

Stem-loop dan-mir-5


Accession
MI0008994
Description
Drosophila ananassae dan-mir-5 precursor miRNA
Gene family
MIPF0000309; mir-5


Sequence

uaAAAGGAACGAUCGUUGUGAUAUGcguuuaucccucguuacauaucacagugauuuuccuuuauaa
..(((((((.(((((((((((((((((.........))...))))))))))))))))))))))....

Structure
--ua       C               ---  uuu 
    AAAGGAA GAUCGUUGUGAUAUG   cg   a
    ||||||| |||||||||||||||   ||   u
    uuuccuu uuagugacacuauac   gc   c
aaua       -               auu  ucc 


Annotation confidence Not enough data
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Genome context
scaffold_13266: 9731682-9731748 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from dan-mir-5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-5

Accession MIMAT0008457
Description Drosophila ananassae dan-miR-5 mature miRNA
Sequence 3 - AAAGGAACGAUCGUUGUGAUAUG - 25
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218