miRBase entry: dan-mir-317

Stem-loop dan-mir-317


Accession
MI0008988
Description
Drosophila ananassae dan-mir-317 precursor miRNA
Gene family
MIPF0000144; mir-317


Sequence

ugcaucggcugcugggauacacccugugcucgcuuugaaugaaaugcaagcaagUGAACACAGCUGGUGGUAUCCAGUggccguuuugcau
((((.(((((((((((...(((((((((.((((((.(..((.....))..))))))).)))))..))))...)))))))))))...)))).

Structure
-    --u           aua    --     c      u aa  a 
 ugca   cggcugcuggg   cacc  cugug ucgcuu g  ug a
 ||||   |||||||||||   ||||  ||||| |||||| |  || a
 acgu   gccggUGACCU   GUGG  GACAC AGUgaa c  ac u
u    uuu           AUG    UC     A      - ga  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_13340: 6479993-6480083 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dan-mir-317
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-317

Accession MIMAT0008452
Description Drosophila ananassae dan-miR-317 mature miRNA
Sequence 55 - UGAACACAGCUGGUGGUAUCCAGU - 78
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218