miRBase entry: dan-mir-275

Stem-loop dan-mir-275


Accession
MI0008985
Description
Drosophila ananassae dan-mir-275 precursor miRNA
Gene family
MIPF0000187; mir-275


Sequence

agucuccuaccuugcgcgcuaaucagugaccggggcugguuuuugcaacagUCAGGUACCUGAAGUAGCGCGCGugguggcagacau
.((((.(((((.(((((((((.((((..(((..(((((..........))))).)))..))))..))))))))).))))).))))..

Structure
-a    c     u         -a    ug   gg     guuu 
  gucu cuacc ugcgcgcua  ucag  acc  ggcug    u
  |||| ||||| |||||||||  ||||  |||  |||||     
  caga ggugg GCGCGCGAU  AGUC  UGG  CUgac    u
ua    c     u         GA    CA   -A     aacg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_12916: 15333995-15334081 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dan-mir-275
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-275

Accession MIMAT0008451
Description Drosophila ananassae dan-miR-275 mature miRNA
Sequence 52 - UCAGGUACCUGAAGUAGCGCGCG - 74
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218