miRBase entry: dan-mir-2c

Stem-loop dan-mir-2c

Accession

MI0008976

Description

Drosophila ananassae dan-mir-2c precursor miRNA

Gene family

MIPF0000049; mir-2

Sequence

aucuuacuuucaaugucaucaaaaagggcugaagagauauuucugcauuugaagugUAUCACAGCCAGCUUUGAUGGGCauugcaauaagc
..((((.((.(((((((((((((...(((((..((.(((((((.......))))))).)).)))))...)))))).))))))).)))))).

Structure

au    c  u       -      aag     aa  g       ug 
  cuua uu caauguc aucaaa   ggcug  ga auauuuc  c
  |||| || ||||||| ||||||   |||||  || |||||||  a
  gaau aa guuaCGG UAGUUU   CCGAC  CU Ugugaag  u
-c    -  c       G      CGA     -A  A       uu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_13340: 12827838-12827928 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dan-mir-2c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dan-miR-2c

Accession	MIMAT0008442
Description	Drosophila ananassae dan-miR-2c mature miRNA
Sequence	57 - UAUCACAGCCAGCUUUGAUGGGC - 79
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218