miRBase entry: dan-mir-79

Stem-loop dan-mir-79


Accession
MI0008966
Description
Drosophila ananassae dan-mir-79 precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

agcugcuuaaccgaugcuuuggcgcuuuagcuguaugauagauuuaaauacuucaUAAAGCUAGAUUACCAAAGCAUuggcuuccgcaggc
..((((..((((((((((((((...(((((((.(((((..............))))).)))))))...)))))))))))).))..))))..

Structure
ag    uu  -            cgc       g     uagauu 
  cugc  aa ccgaugcuuugg   uuuagcu uauga      u
  ||||  || ||||||||||||   ||||||| |||||       
  gacg  uu gguUACGAAACC   AGAUCGA AUacu      a
cg    cc  c            AUU       A     ucauaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_12916: 15864720-15864810 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from dan-mir-79
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-79

Accession MIMAT0008430
Description Drosophila ananassae dan-miR-79 mature miRNA
Sequence 56 - UAAAGCUAGAUUACCAAAGCAU - 77
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218