miRBase entry: dan-mir-13b-1

Stem-loop dan-mir-13b-1


Accession
MI0008963
Description
Drosophila ananassae dan-mir-13b-1 precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

ccaugucguuaaaaggcuugugaccuuauguauuucgcaaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((((.((((...((((.(((....))))))))))))))).)))))))))...)))

Structure
   -ug         -    u    ccu    u   u 
cca   ucguuaaaa ggcu guga   uaug auu c
|||   ||||||||| |||| ||||   |||| |||  
ggu   AGCAGUUUU CCGA CACU   AUac uaa g
   uUG         A    -    ---    -   c 


Annotation confidence Not enough data
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Genome context
scaffold_13340: 12827484-12827552 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dan-mir-13b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dan-miR-13b

Accession MIMAT0008426
Description Drosophila ananassae dan-miR-13b mature miRNA
Sequence 44 - UAUCACAGCCAUUUUGACGAGU - 65
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218