Stem-loop sequence tca-mir-9b

Accession

MI0008935 (change log)

Description

Tribolium castaneum miR-9b stem-loop

Gene family

MIPF0000014; mir-9

Literature search

1 open access papers mention tca-mir-9b
(3 sentences)

Stem-loop

   uugac  c   aag      ugu    gg      ----  g -  g  -      uu    a               g          u 
5'      ga cgu   uuucuu   uuuu  uuccaa    ca g ug gg gccgau  uguu cuuugguaauuuagc uuugugauuu a
        || |||   ||||||   ||||  ||||||    || | || || ||||||  |||| ||||||||||||||| |||||||||| u
3'      cu gca   gaagaa   aagg  gagguu    gu c gc uu cgguug  guaa gaaaccauuagaucg aaauacugag u
   --uua  u   ---      --u    uu      agag  g u  g  a      gc    c               -          u 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Tcas4.0): Unmapped48: 113100-113268 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir9b
• miRBase Tracker:MI0008935

Mature sequence tca-miR-9b-5p

• Accession: MIMAT0019134
• Sequence: 58 - cuuugguaauuuagcguuugu - 78
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS00000A0157_7070

Mature sequence tca-miR-9b-3p

• Accession: MIMAT0019135
• Sequence: 94 - auaaagcuagauuaccaaagca - 115
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS0000263F8F_7070

References

1. PMID:18571123 "Genome-wide mapping of conserved microRNAs and their host transcripts in Tribolium castaneum" Luo Q, Zhou Q, Yu X, Lin H, Hu S, Yu J J Genet Genomics. 35:349-355(2008).
2. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).