Stem-loop sequence tca-mir-927a

Accession

MI0008931 (change log)

Previous IDs

tca-mir-927

Description

Tribolium castaneum miR-927 stem-loop

Gene family

MIPF0000452; mir-927

Stem-loop

   u               cu       a   u  g 
5'  uucgguuuagaauuc  acgcuuu ccg gu a
    |||||||||||||||  ||||||| ||| || a
3'  aagcuaagucuuagg  ugcgaaa ggu cg a
   c               uu       c   -  g 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Tcas4.0): ChLG9: 11531396-11531463 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tca-mir-927a

• tca-mir-927a: ChLG9: 11531396-11531463 [+]
• tca-mir-927c: ChLG9: 11531399-11531457 [-]

Database links

• EntrezGene:Mir927
• miRBase Tracker:MI0008931

Mature sequence tca-miR-927a-5p

• Accession: MIMAT0008391
• Previous IDs: tca-miR-927;tca-miR-927-5p
• Sequence: 7 - uuuagaauuccuacgcuuua - 26
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS0000195A55_7070

Mature sequence tca-miR-927a-3p

• Accession: MIMAT0019131
• Previous IDs: tca-miR-927-3p
• Sequence: 43 - caaagcguuuggauucugaaucg - 65
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS000039BCD3_7070

References

1. PMID:18651924 "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)" Singh J, Nagaraju J Insect Mol Biol. 17:427-436(2008).
2. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).