Stem-loop sequence tca-mir-307

Accession

MI0008929 (change log)

Description

Tribolium castaneum miR-307 stem-loop

Gene family

MIPF0000293; mir-67

Stem-loop

   --   ga         ccu  g       u  uu 
5'   ggu  cucacucaa   gg ugugaug gu  g
     |||  |||||||||   || ||||||| ||  c
3'   cca  gagugaguu   cc acacuac ca  u
   gg   gc         ccu  a       -  ug 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG8: 12648348-12648415 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tca-mir-307

• tca-mir-307: ChLG8: 12648348-12648415 [+]
• tca-mir-307b: ChLG8: 12648350-12648407 [-]

Database links

• EntrezGene:Mir307
• miRBase Tracker:MI0008929

Mature sequence tca-miR-307-5p

• Accession: MIMAT0019129
• Sequence: 5 - acucacucaaccugggugugaugug - 29
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS000016CCED_7070

Mature sequence tca-miR-307-3p

• Accession: MIMAT0008389
• Previous IDs: tca-miR-307
• Sequence: 42 - ucacaaccuccuugagugag - 61
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS00000FBB5F_7070

References

1. PMID:18651924 "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)" Singh J, Nagaraju J Insect Mol Biol. 17:427-436(2008).
2. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).