Stem-loop tca-mir-307

Accession

MI0008929

Description

Tribolium castaneum tca-mir-307 precursor miRNA

Gene family

MIPF0000293; mir-67

Sequence

ggugACUCACUCAACCUGGGUGUGAUGUGuuugcuguaccaUCACAACCUCCUUGAGUGAGcgaccgg
(((..(((((((((...((.(((((((.((.......))))))))).))...)))))))))..)))..

Structure

--   gA         CCU  G       U  uu 
  ggu  CUCACUCAA   GG UGUGAUG Gu  g
  |||  |||||||||   || ||||||| ||  c
  cca  GAGUGAGUU   CC ACACUac ca  u
gg   gc         CCU  A       -  ug 

Annotation confidence Not enough data

Genome context

ChLG8: 12648348-12648415 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-307

Mature tca-miR-307-3p

• Accession: MIMAT0008389
• Description: Tribolium castaneum tca-miR-307-3p mature miRNA
• Sequence: 42 - UCACAACCUCCUUGAGUGAG - 61
• Evidence: experimental ; SOLID [2]

Mature tca-miR-307-5p

• Accession: MIMAT0019129
• Description: Tribolium castaneum tca-miR-307-5p mature miRNA
• Sequence: 5 - ACUCACUCAACCUGGGUGUGAUGUG - 29
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696