Stem-loop sequence tca-mir-305

Accession

MI0008928 (change log)

Description

Tribolium castaneum miR-305 stem-loop

Gene family

MIPF0000158; mir-305

Literature search

1 open access papers mention tca-mir-305
(1 sentences)

Stem-loop

         uc  u         u      c  u  uaua 
5' cacaug  ua uguacuuca caggug uc gg    c
   ||||||  || ||||||||| |||||| || ||     
3' guguau  au acgugaggu guccac ag cc    u
         ua  c         u      -  c  uuuu 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Tcas4.0): ChLG9: 10587469-10587543 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tca-mir-305

• tca-mir-275: ChLG9: 10587608-10587678 [-]
• tca-mir-305: ChLG9: 10587469-10587543 [-]
• tca-mir-11628: ChLG9: 10582062-10582156 [-]

Database links

• EntrezGene:Mir305
• miRBase Tracker:MI0008928

Mature sequence tca-miR-305-5p

• Accession: MIMAT0008388
• Previous IDs: tca-miR-305
• Sequence: 10 - auuguacuucaucaggugcuc - 30
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS00000E14E2_7070

Mature sequence tca-miR-305-3p

• Accession: MIMAT0019128
• Sequence: 46 - cgacaccuguuggagugcacua - 67
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS00003668E1_7070

References

1. PMID:18651924 "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)" Singh J, Nagaraju J Insect Mol Biol. 17:427-436(2008).
2. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).