Stem-loop sequence tca-mir-282

Accession

MI0008926 (change log)

Description

Tribolium castaneum miR-282 stem-loop

Gene family

MIPF0000150; mir-282

Stem-loop

   ug     g       ucc      u     g  aau 
5'   uagag uagccuc   uaggcu ugucu ug   u
     ||||| |||||||   |||||| ||||| ||    
3'   auuuc aucggag   guccga acaga gc   u
   cg     a       uua      u     -  cgg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG7: 9033595-9033667 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir282
• miRBase Tracker:MI0008926

Mature sequence tca-miR-282-5p

• Accession: MIMAT0008386
• Previous IDs: tca-miR-282
• Sequence: 9 - uagccucuccuaggcuuugucu - 30
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS00000B6A2D_7070

Mature sequence tca-miR-282-3p

• Accession: MIMAT0019126
• Sequence: 46 - acauagccugauugaggcuaa - 66
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS0000431EC6_7070

References

1. PMID:18651924 "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)" Singh J, Nagaraju J Insect Mol Biol. 17:427-436(2008).
2. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).