Stem-loop sequence tca-mir-279a

Accession

MI0008924 (change log)

Previous IDs

tca-mir-279

Description

Tribolium castaneum miR-279a stem-loop

Gene family

MIPF0000184; mir-279

Literature search

2 open access papers mention tca-mir-279a
(8 sentences)

Stem-loop

             uc         g  ac    u 
5' cuugaugggu  gggucuagu gc  gguu u
   ||||||||||  ||||||||| ||  |||| u
3' gaauuacuca  ccuagauca ug  ucaa u
             ca         g  cu    c 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Tcas4.0): ChLG7: 7544158-7544222 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tca-mir-279a

• tca-mir-279a: ChLG7: 7544158-7544222 [-]
• tca-mir-279d: ChLG7: 7543987-7544128 [-]

Database links

• EntrezGene:Mir279a
• miRBase Tracker:MI0008924

Mature sequence tca-miR-279a-5p

• Accession: MIMAT0019125
• Sequence: 4 - gauggguucgggucuaguggcacg - 27
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS00000930AE_7070

Mature sequence tca-miR-279a-3p

• Accession: MIMAT0008383
• Previous IDs: tca-miR-279;tca-miR-279a
• Sequence: 43 - ugacuagauccacacucauuaa - 64
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS0000003085_7070

References

1. PMID:18651924 "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)" Singh J, Nagaraju J Insect Mol Biol. 17:427-436(2008).
2. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).