Stem-loop tca-mir-279a

Accession

MI0008924

Description

Tribolium castaneum tca-mir-279a precursor miRNA

Gene family

MIPF0000184; mir-279

Literature search

2 open access papers mention tca-mir-279a
(8 sentences)

Sequence

cuuGAUGGGUUCGGGUCUAGUGGCACGguuuuuucaacuucgUGACUAGAUCCACACUCAUUAAg
((((((((((..(((((((((.((..((((.....))))..)).)))))))))..))))))))))

Structure

          UC         G  AC    u 
cuuGAUGGGU  GGGUCUAGU GC  Gguu u
||||||||||  ||||||||| ||  |||| u
gAAUUACUCA  CCUAGAUCA Ug  ucaa u
          CA         G  cu    c 

Annotation confidence Not enough data

Genome context

ChLG7: 7544158-7544222 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-279a

Mature tca-miR-279a-3p

• Accession: MIMAT0008383
• Description: Tribolium castaneum tca-miR-279a-3p mature miRNA
• Sequence: 43 - UGACUAGAUCCACACUCAUUAA - 64
• Evidence: experimental ; SOLID [2]

Mature tca-miR-279a-5p

• Accession: MIMAT0019125
• Description: Tribolium castaneum tca-miR-279a-5p mature miRNA
• Sequence: 4 - GAUGGGUUCGGGUCUAGUGGCACG - 27
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696