miRBase entry: tca-mir-190

Stem-loop tca-mir-190


Accession
MI0008917
Description
Tribolium castaneum tca-mir-190 precursor miRNA
Gene family
MIPF0000076; mir-190

Literature search
1 open access papers mention tca-mir-190
(1 sentences)

Sequence

gugaguugcuauaAGAUAUGUUUGAUAUUCUUGGuuguauuuuuaauucaCCCAGGAGUCAAACAUAUuauuauagaagcgucacg
(((((((.((((((((((((((((((..((((((.((...........)).)))))))))))))))))).)))))).))).)))).

Structure
-    -   g      -            AU      u  uauu 
 guga guu cuauaA GAUAUGUUUGAU  UCUUGG ug    u
 |||| ||| |||||| ||||||||||||  |||||| ||    u
 cacu cga gauauu uUAUACAAACUG  AGGACC ac    u
g    g   a      a            --      C  uuaa 


Annotation confidence Not enough data
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Genome context
ChLG7: 782727-782812 [-]

Database links

Mature tca-miR-190-5p

Accession MIMAT0008375
Description Tribolium castaneum tca-miR-190-5p mature miRNA
Sequence 14 - AGAUAUGUUUGAUAUUCUUGG - 34
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-190-3p

Accession MIMAT0019119
Description Tribolium castaneum tca-miR-190-3p mature miRNA
Sequence 51 - CCCAGGAGUCAAACAUAU - 68
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696