miRBase entry: tca-mir-87a

Stem-loop tca-mir-87a


Accession
MI0008908
Description
Tribolium castaneum tca-mir-87a precursor miRNA
Gene family
MIPF0000152; mir-87


Sequence

cagucguugacGGGCUUGAAAUCUUGCUCUCCCgugauuauuucguaaaggGUGAGCAAAGUUUCAGGUGUGucaaaggcuu
.((((.((((((.(((((((((.((((((.(((................))).)))))).))))))))).)))))).)))).

Structure
c    g      G         C      U   gugauua 
 aguc uugacG GCUUGAAAU UUGCUC CCC       u
 |||| |||||| ||||||||| |||||| |||        
 ucgg aacuGU UGGACUUUG AACGAG Ggg       u
u    a      G         A      U   aaaugcu 


Annotation confidence Not enough data
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Genome context
ChLG6: 1651407-1651488 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-87a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-87a-3p

Accession MIMAT0008366
Description Tribolium castaneum tca-miR-87a-3p mature miRNA
Sequence 52 - GUGAGCAAAGUUUCAGGUGUG - 72
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-87a-5p

Accession MIMAT0019110
Description Tribolium castaneum tca-miR-87a-5p mature miRNA
Sequence 12 - GGGCUUGAAAUCUUGCUCUCCC - 33
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696