Stem-loop sequence tca-mir-71

Accession

MI0008907 (change log)

Description

Tribolium castaneum miR-71 stem-loop

Gene family

MIPF0000278; mir-71

Literature search

2 open access papers mention tca-mir-71
(2 sentences)

Stem-loop

      u  ucu         u            ---     a 
5' guc cu   ugaaagaca ggguagugagau   guuua u
   ||| ||   ||||||||| ||||||||||||   ||||| u
3' uag ga   acuuucugu uccaucacucug   uaaau a
      c  ugu         -            uuu     a 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Tcas4.0): ChLG3: 562386-562464 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tca-mir-71

• tca-mir-3842: ChLG3: 560957-561052 [+]
• tca-mir-71: ChLG3: 562386-562464 [+]
• tca-mir-2-3: ChLG3: 562500-562582 [+]
• tca-mir-13a: ChLG3: 562623-562702 [+]
• tca-mir-13b: ChLG3: 562739-562812 [+]
• tca-mir-2-1: ChLG3: 562865-562952 [+]
• tca-mir-2-2: ChLG3: 563018-563102 [+]

Database links

• EntrezGene:Mir71
• miRBase Tracker:MI0008907

Mature sequence tca-miR-71-5p

• Accession: MIMAT0008365
• Previous IDs: tca-miR-71
• Sequence: 10 - ugaaagacauggguagugagau - 31
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS00004DE0BE_7070

Mature sequence tca-miR-71-3p

• Accession: MIMAT0019109
• Sequence: 51 - ucucacuaccuugucuuucaug - 72
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS00002FE528_7070

References

1. PMID:18651924 "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)" Singh J, Nagaraju J Insect Mol Biol. 17:427-436(2008).
2. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).