Stem-loop tca-mir-34

Accession

MI0008906

Description

Tribolium castaneum tca-mir-34 precursor miRNA

Gene family

MIPF0000039; mir-34

Literature search

1 open access papers mention tca-mir-34
(1 sentences)

Sequence

auguacacggUGGCAGUGUGGUUAGCUGGUuguguuuuuuugaucaCGACCACUAUCCAUACUCCCUCCaugaauaucg
((((.((.((.((.(((((((.(((.((((((((.((....)).))))))))))).))))))).)).)).)).))))..

Structure

--    a  c  U  C       U   C        u  u 
  augu ca gg GG AGUGUGG UAG UGGUugug uu u
  |||| || || || ||||||| ||| |||||||| ||  
  uaua gu CC CC UCAUACC AUC ACCAGCac ag u
gc    a  a  U  C       U   -        u  u 

Annotation confidence Not enough data

Genome context

ChLG7: 13763505-13763583 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-34

Mature tca-miR-34-5p

• Accession: MIMAT0008364
• Description: Tribolium castaneum tca-miR-34-5p mature miRNA
• Sequence: 11 - UGGCAGUGUGGUUAGCUGGU - 30
• Evidence: experimental ; SOLID [2]

Mature tca-miR-34-3p

• Accession: MIMAT0019108
• Description: Tribolium castaneum tca-miR-34-3p mature miRNA
• Sequence: 47 - CGACCACUAUCCAUACUCCCUCC - 69
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696