miRBase entry: tca-mir-33

Stem-loop tca-mir-33


Accession
MI0008905
Description
Tribolium castaneum tca-mir-33 precursor miRNA
Gene family
MIPF0000070; mir-33


Sequence

agaagaugaauauuaugaucuuagGUGCAUUGUAGUUGCAUUGCAUGuuauucaaagugCAGUGUCUCUCCAGUGCAACUuagcgcauaauuucacaccucu
......((((.((((((..((.((.(((((((.((..(((((((((..........)))))))))..)).))))))).)).))..)))))))))).......

Structure
-agaaga    u      au  u  G       U  UU         Guua 
       ugaa auuaug  cu ag UGCAUUG AG  GCAUUGCAU    u
       |||| ||||||  || || ||||||| ||  |||||||||     
       acuu uaauac  ga UC ACGUGAC UC  UGUGACgug    u
ucuccac    -      gc  u  A       C  UC         aaac 


Annotation confidence Not enough data
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Genome context
ChLG4: 8178499-8178600 [-]

Database links

Mature tca-miR-33-5p

Accession MIMAT0008363
Description Tribolium castaneum tca-miR-33-5p mature miRNA
Sequence 25 - GUGCAUUGUAGUUGCAUUGCAUG - 47
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-33-3p

Accession MIMAT0019107
Description Tribolium castaneum tca-miR-33-3p mature miRNA
Sequence 60 - CAGUGUCUCUCCAGUGCAACU - 80
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696