Stem-loop sequence tca-mir-31

Accession

MI0008904 (change log)

Previous IDs

tca-mir-31a

Description

Tribolium castaneum miR-31 stem-loop

Gene family

MIPF0000064; mir-31

Literature search

1 open access papers mention tca-mir-31
(1 sentences)

Stem-loop

        -a   ca   aa    uc          aaggu 
5' gaggc  gag  ggc  gaug  ggcauagcug     g
   |||||  |||  |||  ||||  ||||||||||     u
3' uuccg  uuc  ccg  cuac  cuguaucggc     u
        aa   aa   gc    -u          aaagu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG7: 5322477-5322553 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir31a
• miRBase Tracker:MI0008904

Mature sequence tca-miR-31-5p

• Accession: MIMAT0008362
• Previous IDs: tca-miR-31a
• Sequence: 11 - aggcaagaugucggcauagcu - 31
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS0000277EB8_7070

Mature sequence tca-miR-31-3p

• Accession: MIMAT0019106
• Sequence: 47 - ggcuaugucucauccggccaac - 68
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS00005E198A_7070

References

1. PMID:18651924 "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)" Singh J, Nagaraju J Insect Mol Biol. 17:427-436(2008).
2. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).