Stem-loop sequence tca-mir-13b

Accession

MI0008902 (change log)

Description

Tribolium castaneum miR-13b stem-loop

Gene family

MIPF0000049; mir-2

Stem-loop

   -u   cu  ca     uu         a   ua ua 
5'   gcc  au  gucaa  ugguuguga acc  g  u
     |||  ||  |||||  ||||||||| |||  |  u
3'   ugg  ug  caguu  accgacacu ugg  u  u
   gu   uu  ag     uu         a   gc ua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Tcas4.0): ChLG3: 562739-562812 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from tca-mir-13b

• tca-mir-3842: ChLG3: 560957-561052 [+]
• tca-mir-71: ChLG3: 562386-562464 [+]
• tca-mir-2-3: ChLG3: 562500-562582 [+]
• tca-mir-13a: ChLG3: 562623-562702 [+]
• tca-mir-13b: ChLG3: 562739-562812 [+]
• tca-mir-2-1: ChLG3: 562865-562952 [+]
• tca-mir-2-2: ChLG3: 563018-563102 [+]

Database links

• EntrezGene:Mir13b
• miRBase Tracker:MI0008902

Mature sequence tca-miR-13b-5p

• Accession: MIMAT0019104
• Sequence: 9 - cagucaauuugguugugaaaccu - 31
• Evidence: experimental; SOLID [2]

Mature sequence tca-miR-13b-3p

• Accession: MIMAT0008360
• Previous IDs: tca-miR-13b
• Sequence: 46 - uaucacagccauuuugacgagu - 67
• Evidence: experimental; SOLID [2]
• Database links:
  • RNAcentral:URS000004764F_7070

References

1. PMID:18651924 "In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)" Singh J, Nagaraju J Insect Mol Biol. 17:427-436(2008).
2. PMID:20817720 "Functional shifts in insect microRNA evolution" Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S Genome Biol Evol. 2:686-696(2010).