miRBase entry: tca-mir-1

Stem-loop tca-mir-1


Accession
MI0008892
Description
Tribolium castaneum tca-mir-1 precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
1 open access papers mention tca-mir-1
(2 sentences)

Sequence

uucgcgaguuCCGUGCUUCCUUACUUCCCAUAgugcuuuaaacguaUGGAAUGUAAAGAAGUAUGGAGcgaa
.((((....((((((((((.((((...(((((((.......)).)))))...)))).)))))))))))))).

Structure
u    gagu          C    UUC     -  gc 
 ucgc    uCCGUGCUUC UUAC   CCAUA gu  u
 ||||    |||||||||| ||||   ||||| ||  u
 agcG    AGGUAUGAAG AAUG   GGUau ca  u
a    ----          A    UAA     g  aa 


Annotation confidence Not enough data
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Genome context
ChLG5: 10252845-10252916 [-]

Database links

Mature tca-miR-1-3p

Accession MIMAT0008352
Description Tribolium castaneum tca-miR-1-3p mature miRNA
Sequence 47 - UGGAAUGUAAAGAAGUAUGGAG - 68
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-1-5p

Accession MIMAT0019092
Description Tribolium castaneum tca-miR-1-5p mature miRNA
Sequence 11 - CCGUGCUUCCUUACUUCCCAUA - 32
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696